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Esrum Cluster documentation
Esrum Cluster documentation
  • Contact us
  • Overview of cluster
  • Guidelines and policies
  • Troubleshooting

Using the cluster

  • Applying for access
  • Connecting to the cluster
  • Data storage on Esrum
    • Creating projects and datasets
  • Running jobs using Slurm
    • Basic Slurm jobs
    • Advanced Slurm jobs
    • Monitoring slurm jobs
    • GPU / high-memory jobs
  • Software on Esrum
  • Transferring data

Resources

  • Human cohorts
  • Common datasets

Other services

  • RStudio
  • Jupyter Notebooks
  • Containerized software
  • Shiny servers

Tips and tricks

  • Creating environment modules
  • Persistent sessions with tmux
  • Batching commands in bash
  • Writing robust bash scripts
  • Using Snakemake on Esrum
  • Using R on Esrum

Outreach

  • Welcome email
  • Presentations
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